Flavobacteriaceae
| Flavobacteriaceae | |
|---|---|
| |
| Elizabethkingia meningoseptica on a blood agar plate | |
Scientific classification 
| |
| Domain: | Bacteria |
| Phylum: | Bacteroidota |
| Class: | Flavobacteriia |
| Order: | Flavobacteriales |
| Family: | Flavobacteriaceae Reichenbach 1992[1] |
| Genera | |
|
See text. | |
The family Flavobacteriaceae is composed of environmental bacteria.[1][2] Most species are aerobic, while some are microaerobic to anaerobic; for example Capnocytophaga and Coenonia.[3]
Genera
[edit]The family Flavobacteriaceae comprises the following genera:[4]
- Actibacter Kim et al. 2008
- Aequorivita Bowman and Nichols 2002
- Aestuariibaculum Jeong et al. 2013
- Aestuariimonas Park et al. 2018
- Aestuariivivens Park et al. 2015
- Algibacter Nedashkovskaya et al. 2004
- Algitalea Yoon et al. 2015
- "Algorimicrobium" García-López et al. 2019
- "Altibacter" Chen et al. 2014
- "Altuibacter" Chen et al. 2013
- Amniculibacterium Chen et al. 2020
- "Candidatus Amoebinatus" Greub et al. 2004
- Antarcticibacterium Li et al. 2018
- Antarcticimonas Yang et al. 2014
- Aquaticitalea Xamxidin et al. 2016
- Aquibacter Hameed et al. 2014
- Aquimarina Nedashkovskaya et al. 2005
- Arcticiflavibacter Liu et al. 2016
- Arenibacter Ivanova et al. 2001
- Arenitalea Zhang et al. 2013
- "Ascidiaceibacter" Chen et al. 2018
- Ascidiimonas Yoon et al. 2016
- Aurantiacicella Teramoto et al. 2016
- Aurantibacter García-López et al. 2020
- Aurantivirga Song et al. 2015
- Aureibaculum Zhao et al. 2021
- Aureicoccus Park et al. 2013
- Aureisphaera Yoon et al. 2015
- Aureitalea Park et al. 2012
- Aureivirga Haber et al. 2013
- "Avrilella" Leyer et al. 2020
- Bizionia Nedashkovskaya et al. 2005
- Capnocytophaga Leadbetter et al. 1982
- Cellulophaga Johansen et al. 1999
- Changchengzhania Wang et al. 2017
- "Citreibacter" Yoon et al. 2018
- Citreitalea Yoon et al. 2014
- "Cochleicola" Shin et al. 2016
- Coenonia Vandamme et al. 1999
- Confluentibacter Park et al. 2016
- "Coraliitalea" Yoon et al. 2018
- Corallibacter Kim et al. 2012
- Costertonia Kwon et al. 2006
- Croceibacter Cho and Giovannoni 2003
- Croceitalea Lee et al. 2008
- Croceivirga Hu et al. 2017
- Daejeonia Siddiqi et al. 2017
- Dokdonia Yoon et al. 2005
- "Candidatus Endobryopsis" Zan et al. 2019[5]
- Eudoraea Alain et al. 2008
- Euzebyella Lucena et al. 2010
- Faecalibacter Chen et al. 2020
- "Feifantangia" Zheng et al. 2015
- Flavicella Teramoto and Nishijima 2015
- Flavihalobacter Yin et al. 2021
- Flavimarina Nedashkovskaya et al. 2015
- Flaviramulus Einen and Øvreås 2006
- Flavivirga Yi et al. 2012
- Flavobacterium Bergey et al. 1923 (Approved Lists 1980)
- Formosa Ivanova et al. 2004
- Frondibacter Yoon et al. 2015
- "Fucobacter" Sakai et al. 2002
- Fulvibacter Khan et al. 2008
- Gaetbulibacter Jung et al. 2005
- Galbibacter Khan et al. 2007
- Gangjinia Lee et al. 2011
- Gelatiniphilus Tang et al. 2016
- Gelidibacter Bowman et al. 1997
- Geojedonia Park et al. 2013
- Gillisia Van Trappen et al. 2004
- Gilvibacter Khan et al. 2007
- Gramella Nedashkovskaya et al. 2005
- Haloflavibacter Feng et al. 2020
- Hanstruepera Hameed et al. 2015
- "Candidatus Hemobacterium" Zhang and Rikihisa 2004
- Hoppeia Kwon et al. 2014
- Hwangdonia Jung et al. 2013
- Hyunsoonleella Yoon et al. 2010
- Ichthyenterobacterium Shakeela et al. 2015
- Imtechella Surendra et al. 2012
- Jejudonia Park et al. 2013
- Jejuia Lee et al. 2009
- Joostella Quan et al. 2008
- Kordia Sohn et al. 2004
- Kriegella Nedashkovskaya et al. 2008
- Lacinutrix Bowman and Nichols 2005
- Leeuwenhoekiella Nedashkovskaya et al. 2005
- Leptobacterium Mitra et al. 2009
- Litoribaculum Jin and Jeon 2015
- Lutaonella Arun et al. 2009
- Lutibacter Choi and Cho 2006
- Lutimonas Yang et al. 2007
- Mangrovimonas Li et al. 2013
- Maribacter Nedashkovskaya et al. 2004
- Mariniflexile Nedashkovskaya et al. 2006
- Marinirhabdus Wu et al. 2016
- "Marinitalea" Kim et al. 2011
- Marinivirga Park et al. 2013
- Maritimimonas Park et al. 2009
- Marixanthomonas Romanenko et al. 2007
- Meridianimaribacter Wang et al. 2010
- Mesoflavibacter Asker et al. 2008
- Mesohalobacter Feng et al. 2020
- Mesonia Nedashkovskaya et al. 2003
- Muricauda Bruns et al. 2001
- Muriicola Kahng et al. 2010
- Myroides Vancanneyt et al. 1996
- Namhaeicola Jung et al. 2012
- Neptunitalea Yoon and Kasai 2015
- Nonlabens Lau et al. 2005
- Oceanihabitans Zhang et al. 2016
- "Ochrovirga" Kwon et al. 2014
- Olleya Mancuso Nichols et al. 2005
- Paramesonia Wang et al. 2020
- Pareuzebyella Huang et al. 2021
- Patiriisocius Kawano et al. 2020
- Paucihalobacter Wu et al. 2020
- Pelagihabitans Wang et al. 2020
- Pibocella Nedashkovskaya et al. 2005
- Planktosalinus Zhong et al. 2016
- Polaribacter Gosink et al. 1998
- Pontimicrobium Janthra et al. 2020
- Poritiphilus Wang et al. 2020
- Postechiella Lee et al. 2012
- Pricia Yu et al. 2012
- "Candidatus Prosiliicoccus" Francis et al. 2019
- Pseudobizionia Park et al. 2018
- Pseudofulvibacter Yoon et al. 2013
- Pseudotenacibaculum Huang et al. 2016
- Pseudozobellia Nedashkovskaya et al. 2009
- Psychroflexus Bowman et al. 1999
- Psychroserpens Bowman et al. 1997
- "Pukyongia" Kim et al. 2020
- Pustulibacterium Wang et al. 2013
- Robertkochia Hameed et al. 2014
- Robiginitalea Cho and Giovannoni 2004
- Sabulilitoribacter Park et al. 2014
- Salegentibacter McCammon and Bowman 2000
- Salinimicrobium Lim et al. 2008
- Saonia Fagervold et al. 2017
- Sediminibacter Khan et al. 2007
- Sediminicola Khan et al. 2006
- Seonamhaeicola Park et al. 2014
- Siansivirga Hameed et al. 2013
- Sinomicrobium Xu et al. 2013
- Snuella Yi and Chun 2011
- "Spodiobacter" Tomida et al. 2019
- Spongiiferula Yoon et al. 2016
- Spongiimicrobium Yoon et al. 2016
- Spongiivirga Yoon et al. 2015
- "Spongitalea" Mitra et al. 2012
- Subsaxibacter Bowman and Nichols 2005
- Subsaximicrobium Bowman and Nichols 2005
- "Sufflavibacter" Kwon et al. 2007
- Sungkyunkwania Yoon et al. 2013
- Taeania Jung et al. 2016
- Tamlana Lee 2007
- Tenacibaculum Suzuki et al. 2001
- Ulvibacter Nedashkovskaya et al. 2004
- Ulvibacterium Zhang et al. 2021
- Urechidicola Shin and Yi 2020
- "Vaginella" Diop et al. 2017
- Wenyingzhuangia Liu et al. 2014
- Winogradskyella Nedashkovskaya et al. 2005
- Wocania He et al. 2020
- Xanthomarina Vaidya et al. 2015
- Yeosuana Kwon et al. 2006
- Zeaxanthinibacter Asker et al. 2007
- Zhouia Liu et al. 2006
- Zobellia Barbeyron et al. 2001
- Zunongwangia corrig. Qin et al. 2007
Phylogeny
[edit]The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature[4] and the phylogeny is based on whole-genome sequences.[6][a]
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Notes
[edit]- ^ Actibacter, Aestuariibaculum, Aestuariimonas, Aestuariivivens, Algitalea, Amniculibacterium, Antarcticibacterium, Antarcticimonas, Aquaticitalea, Aquibacter, Arcticiflavibacter, Ascidiimonas, Aurantiacicella, Aurantivirga, Aureibaculum, Aureisphaera, Aureivirga, Changchengzhania, Citreitalea, Coenonia, Corallibacter, Costertonia, Daejeonia, Euzebyella, Faecalibacter, Flavicella, Flavihalobacter, Flavimarina, Frondibacter, Fulvibacter, Gangjinia, Gelatiniphilus, Geojedonia, Gilvibacter, Haloflavibacter, Hoppeia, Hwangdonia, Jejudonia, Leptobacterium, Litoribaculum, Lutaonella, Lutimonas, Mariniflexile, Marinivirga, Maritimimonas, Marixanthomonas, Meridianimaribacter, Mesohalobacter, Namhaeicola, Neptunitalea, Paramesonia, Pareuzebyella, Patiriisocius, Paucihalobacter, Pelagihabitans, Pibocella, Planktosalinus, Pontimicrobium, Poritiphilus, Postechiella, Pseudobizionia, Pseudofulvibacter, Pseudotenacibaculum, Robertkochia, Sabulilitoribacter, Saonia, Sediminibacter, Sediminicola, Seonamhaeicola, Snuella, Spongiiferula, Spongiimicrobium, Spongiivirga, Subsaxibacter, Subsaximicrobium, Sungkyunkwania, Taeania, Ulvibacterium, Urechidicola, Wocania, and Yeosuana are not included in this phylogenetic tree.
References
[edit]- ^ a b Reichenbach H. (1989). "Order 1. Cytophagales Leadbetter 1974, 99*=". In Staley JT, Bryant MP, Pfennig N, Holt JG (eds.). Bergey's manual of systematic bacteriology. Vol. 3. Baltimore: The Williams & Wilkins Co. pp. 2011–2013.
- ^ Boone DR, Castenholz RW, eds. (2001). Bergey's Manual of Systematic Bacteriology. Vol. 1 (The Archaea and the deeply branching and phototrophic Bacteria) (2nd ed.). New York, NY: Springer-Verlag. pp. 465–466.
- ^ "An Introduction to the Family Flavobacteriaceae". The Prokaryotes. New York: Springer. 2006. pp. 455–480. ISBN 978-0-387-25497-5.
- ^ a b Euzéby JP, Parte AC. "Flavobacteriaceae". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved June 29, 2021.
- ^ Zan J, Li Z, Tianero MD, Davis J, Hill RT, Donia MS (2019). "A microbial factory for defensive kahalalides in a tripartite marine symbiosis". Science. 364 (6445): eaaw6732. doi:10.1126/science.aaw6732. PMID 31196985. S2CID 189818260.
- ^ García-López M, Meier-Kolthoff JP, Tindall BJ, Gronow S, Woyke T, Kyrpides NC, Hahnke RL, Göker M. (2019). "Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes". Front Microbiol. 10: 2083. doi:10.3389/fmicb.2019.02083. PMC 6767994. PMID 31608019.