Peptidylprolyl isomerase D

For other uses of the acronym PPID, see PPID.

"Cyclophilin D" redirects here. Not to be confused with peptidyl-prolyl cis-trans isomerase, mitochondrial (PPIF), which may also be referred to as Cyclophilin D.

PPID
Identifiers
Aliases	PPID, CYP-40, CYPD, peptidylprolyl isomerase D
External IDs	OMIM: 601753; MGI: 1914988; HomoloGene: 31283; GeneCards: PPID; OMA:PPID - orthologs
Gene location (Human) Chr. Chromosome 4 (human) Band 4q32.1 Start 158,709,127 bp End 158,723,396 bp
Gene location (Mouse) Chr. Chromosome 3 (mouse) Band 3|3 E3 Start 79,498,649 bp End 79,510,957 bp
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in right lobe of liver muscle of thigh gastrocnemius muscle mucosa of transverse colon gonad Skeletal muscle tissue of rectus abdominis right adrenal cortex rectum body of tongue left ventricle Top expressed in tail of embryo epiblast cingulate gyrus embryo embryo genital tubercle neural tube ventricular zone amygdala otic vesicle More reference expression data BioGPS More reference expression data
Gene ontology Molecular function Hsp90 protein binding heat shock protein binding transcription factor binding isomerase activity peptidyl-prolyl cis-trans isomerase activity Hsp70 protein binding protein binding estrogen receptor binding cyclosporin A binding unfolded protein binding Cellular component cytoplasm nucleolus nucleus cytosol nucleoplasm mitochondrion Biological process chaperone-mediated protein folding cellular response to UV-A viral release from host cell lipid droplet organization negative regulation of transcription by RNA polymerase II protein folding positive regulation of protein secretion positive regulation of apoptotic process protein transport positive regulation of viral genome replication apoptotic process protein-containing complex assembly protein peptidyl-prolyl isomerization protein refolding negative regulation of apoptotic process regulation of mitochondrial membrane potential Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 5481 67738 Ensembl ENSG00000171497 ENSMUSG00000027804 UniProt Q08752 Q9CR16 RefSeq (mRNA) NM_005038 NM_026352 NM_001356326 RefSeq (protein) NP_005029 NP_080628 NP_001343255 Location (UCSC) Chr 4: 158.71 – 158.72 Mb Chr 3: 79.5 – 79.51 Mb PubMed search
Wikidata
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Peptidylprolyl isomerase D (cyclophilin D), also known as PPID, is an enzyme which in humans is encoded by the PPID gene on chromosome 4. As a member of the peptidyl-prolyl cis-trans isomerase (PPIase) family, this protein catalyzes the cis-trans isomerization of proline imidic peptide bonds, which allows it to facilitate folding or repair of proteins. In addition, PPID participates in many biological processes, including mitochondrial metabolism, apoptosis, redox, and inflammation, as well as in related diseases and conditions, such as ischemic reperfusion injury, AIDS, and cancer.

Structure

Like other cyclophilins, PPID forms a β-barrel structure with a hydrophobic core. This β-barrel is composed of eight anti-parallel β-strands and capped by two α-helices at the top and bottom. In addition, the β-turns and loops in the strands contribute to the flexibility of the barrel. PPID in particular is composed of 370 residues and shares structural homology with PPIF, FKBP4, and FKBP5, including an N-terminal immunophilin-like domain and a C-terminal tetratricopeptide repeat (TPR) domain.

Function

The protein encoded by this gene is a member of the peptidyl-prolyl cis-trans isomerase (PPIase) family. PPIases catalyze the cis-trans isomerization of proline imidic peptide bonds in oligopeptides and accelerate the folding of proteins. Generally, PPIases are found in all eubacteria and eukaryotes, as well as in a few archaea, and thus are highly conserved. The PPIase family is further divided into three structurally distinct subfamilies: cyclophilin (CyP), FK506-binding protein (FKBP), and parvulin (Pvn). As a cyclophilin, PPID binds cyclosporin A (CsA) and can be found within the cell or secreted by the cell. In eukaryotes, cyclophilins localize ubiquitously to many cell and tissue types. In addition to PPIase and protein chaperone activities, cyclophilins also function in mitochondrial metabolism, apoptosis, immunological response, inflammation, and cell growth and proliferation. PPID in particular helps chaperone the assembly of heat shock protein Hsp90, as well as the nuclear localization of glucocorticoid, estrogen and progesterone receptors. Along with PPIF, PPID regulates mitochondrial apoptosis. In response to elevated reactive oxygen species (ROS) and calcium ion levels, PPID interacts with Bax to promote mitochondrial pore formation, thus releasing pro-apoptotic factors such as cytochrome C and AIF.

Clinical Significance

As a cyclophilin, PPID binds the immunosuppressive drug CsA to form a CsA-cyclophilin complex, which then targets calcineurin to inhibit the signaling pathway for T-cell activation.

In cardiac myogenic cells, cyclophilins have been observed to be activated by heat shock and hypoxia-reoxygenation as well as complex with heat shock proteins. Thus, cyclophilins may function in cardioprotection during ischemia-reperfusion injury.

Currently, cyclophilin expression is highly correlated with cancer pathogenesis, but the specific mechanisms remain to be elucidated. Studies have shown that PPID protects human keratinocytes from UVA-induced apoptosis, so medication and therapies that inhibit PPID, such as CsA, may inadvertently aid skin cancer development. Conversely, treatments promoting PPID activity may improve patient outcomes when paired with UVA therapies against cancer.

Interactions

PPID has been shown to interact with:

• CsA
• Bax

Further reading

• Berardini TZ, Bollman K, Sun H, Poethig RS (Mar 2001). "Regulation of vegetative phase change in Arabidopsis thaliana by cyclophilin 40". Science. 291 (5512): 2405–7. Bibcode:2001Sci...291.2405B. doi:10.1126/science.1057144. PMID 11264535. S2CID 31121128.
• Kieffer LJ, Thalhammer T, Handschumacher RE (Mar 1992). "Isolation and characterization of a 40-kDa cyclophilin-related protein". The Journal of Biological Chemistry. 267 (8): 5503–7. doi:10.1016/S0021-9258(18)42795-0. PMID 1544925.
• Hoffmann K, Kakalis LT, Anderson KS, Armitage IM, Handschumacher RE (Apr 1995). "Expression of human cyclophilin-40 and the effect of the His141-->Trp mutation on catalysis and cyclosporin A binding". European Journal of Biochemistry. 229 (1): 188–93. doi:10.1111/j.1432-1033.1995.tb20454.x (inactive 2024-05-07). PMID 7744028.{{cite journal}}: CS1 maint: DOI inactive as of May 2024 (link)
• Kieffer LJ, Seng TW, Li W, Osterman DG, Handschumacher RE, Bayney RM (Jun 1993). "Cyclophilin-40, a protein with homology to the P59 component of the steroid receptor complex. Cloning of the cDNA and further characterization". The Journal of Biological Chemistry. 268 (17): 12303–10. doi:10.1016/S0021-9258(18)31389-9. PMID 8509368.
• Yokoi H, Shimizu Y, Anazawa H, Lefebvre CA, Korneluk RG, Ikeda JE (Aug 1996). "The structure and complete nucleotide sequence of the human cyclophilin 40 (PPID) gene". Genomics. 35 (3): 448–55. doi:10.1006/geno.1996.0384. PMID 8812478.
• Bonaldo MF, Lennon G, Soares MB (Sep 1996). "Normalization and subtraction: two approaches to facilitate gene discovery". Genome Research. 6 (9): 791–806. doi:10.1101/gr.6.9.791. PMID 8889548.
• Silverstein AM, Galigniana MD, Chen MS, Owens-Grillo JK, Chinkers M, Pratt WB (Jun 1997). "Protein phosphatase 5 is a major component of glucocorticoid receptor.hsp90 complexes with properties of an FK506-binding immunophilin". The Journal of Biological Chemistry. 272 (26): 16224–30. doi:10.1074/jbc.272.26.16224. PMID 9195923.
• Young JC, Obermann WM, Hartl FU (Jul 1998). "Specific binding of tetratricopeptide repeat proteins to the C-terminal 12-kDa domain of hsp90". The Journal of Biological Chemistry. 273 (29): 18007–10. doi:10.1074/jbc.273.29.18007. PMID 9660753.
• Mark PJ, Ward BK, Kumar P, Lahooti H, Minchin RF, Ratajczak T (Jan 2001). "Human cyclophilin 40 is a heat shock protein that exhibits altered intracellular localization following heat shock". Cell Stress & Chaperones. 6 (1): 59–70. doi:10.1379/1466-1268(2001)006<0059:hciahs>2.0.co;2 (inactive 2024-04-12). PMC 434384. PMID 11525244.{{cite journal}}: CS1 maint: DOI inactive as of April 2024 (link)
• Ward BK, Allan RK, Mok D, Temple SE, Taylor P, Dornan J, Mark PJ, Shaw DJ, Kumar P, Walkinshaw MD, Ratajczak T (Oct 2002). "A structure-based mutational analysis of cyclophilin 40 identifies key residues in the core tetratricopeptide repeat domain that mediate binding to Hsp90". The Journal of Biological Chemistry. 277 (43): 40799–809. doi:10.1074/jbc.M207097200. PMID 12145316.
• McStay GP, Clarke SJ, Halestrap AP (Oct 2002). "Role of critical thiol groups on the matrix surface of the adenine nucleotide translocase in the mechanism of the mitochondrial permeability transition pore". The Biochemical Journal. 367 (Pt 2): 541–8. doi:10.1042/BJ20011672. PMC 1222909. PMID 12149099.
• Gevaert K, Goethals M, Martens L, Van Damme J, Staes A, Thomas GR, Vandekerckhove J (May 2003). "Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides". Nature Biotechnology. 21 (5): 566–9. doi:10.1038/nbt810. PMID 12665801. S2CID 23783563.
• Schubert A, Grimm S (Jan 2004). "Cyclophilin D, a component of the permeability transition-pore, is an apoptosis repressor". Cancer Research. 64 (1): 85–93. doi:10.1158/0008-5472.CAN-03-0476. PMID 14729611.
• Machida K, Osada H (Dec 2003). "Molecular interaction between cyclophilin D and adenine nucleotide translocase in cytochrome c release: does it determine whether cytochrome c release is dependent on permeability transition or not?". Annals of the New York Academy of Sciences. 1010 (1): 182–5. Bibcode:2003NYASA1010..182M. doi:10.1196/annals.1299.031. PMID 15033717. S2CID 1034903.
• Carrello A, Allan RK, Morgan SL, Owen BA, Mok D, Ward BK, Minchin RF, Toft DO, Ratajczak T (2005). "Interaction of the Hsp90 cochaperone cyclophilin 40 with Hsc70". Cell Stress & Chaperones. 9 (2): 167–81. doi:10.1379/CSC-26R.1 (inactive 2024-04-12). PMC 1065296. PMID 15497503.{{cite journal}}: CS1 maint: DOI inactive as of April 2024 (link)
• Barrios-Rodiles M, Brown KR, Ozdamar B, Bose R, Liu Z, Donovan RS, Shinjo F, Liu Y, Dembowy J, Taylor IW, Luga V, Przulj N, Robinson M, Suzuki H, Hayashizaki Y, Jurisica I, Wrana JL (Mar 2005). "High-throughput mapping of a dynamic signaling network in mammalian cells". Science. 307 (5715): 1621–5. Bibcode:2005Sci...307.1621B. doi:10.1126/science.1105776. PMID 15761153. S2CID 39457788.
• Machida K, Ohta Y, Osada H (May 2006). "Suppression of apoptosis by cyclophilin D via stabilization of hexokinase II mitochondrial binding in cancer cells". The Journal of Biological Chemistry. 281 (20): 14314–20. doi:10.1074/jbc.M513297200. PMID 16551620.
• Mok D, Allan RK, Carrello A, Wangoo K, Walkinshaw MD, Ratajczak T (May 2006). "The chaperone function of cyclophilin 40 maps to a cleft between the prolyl isomerase and tetratricopeptide repeat domains". FEBS Letters. 580 (11): 2761–8. doi:10.1016/j.febslet.2006.04.039. PMID 16650407. S2CID 26811748.