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Human coronavirus 229E

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Alphacoronavirus chicagoense
Transmission electron micrograph of human coronavirus 229E
Virus classification Edit this classification
(unranked): Virus
Realm: Riboviria
Kingdom: Orthornavirae
Phylum: Pisuviricota
Class: Pisoniviricetes
Order: Nidovirales
Family: Coronaviridae
Genus: Alphacoronavirus
Subgenus: Duvinacovirus
Species:
Alphacoronavirus chicagoense
Synonyms
  • Human coronavirus 229E
  • HCoV-229E

Alphacoronavirus chicagoense [1]( also called Human coronavirus 229E and abbreviated HCoV-229E) is a species of coronavirus which infects humans and bats.[2] It is an enveloped, positive-sense, single-stranded RNA virus which enters its host cell by binding to the APN receptor.[3] Along with Human coronavirus OC43 (a member of the Betacoronavirus genus), it is one of the viruses responsible for the common cold.[4][5] HCoV-229E is a member of the genus Alphacoronavirus and subgenus Duvinacovirus.[6][7]

Transmission

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HCoV-229E transmits via droplet-respiration and fomites.

Signs and symptoms

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HCoV-229E is associated with a range of respiratory symptoms, ranging from the common cold to high-morbidity outcomes such as pneumonia and bronchiolitis. However, such high morbidity outcomes are almost always seen in cases with co-infection with other respiratory pathogens; there is a single published case report to date of a 229E infection that caused acute respiratory distress syndrome (ARDS) in an otherwise healthy patient having no detectable co-infection with another pathogen.[8] HCoV-229E is also among the coronaviruses most frequently codetected with other respiratory viruses, particularly with human respiratory syncytial virus (HRSV).[9][10][11]

Epidemiology

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HCoV-229E is one of the seven human coronaviruses which include HCoV-NL63, HCoV-OC43, HCoV-HKU1, MERS-CoV, SARS-CoV-1, and SARS-CoV-2 and are globally distributed.[12][13] However, the viruses were detected in different parts of the world at different times of the year.[14][15][16] A NCBI-study found a previous HCoV-229E infection in 42.9% – 50.0% of children of 6–12 months of age and in 65% of those 2.5–3.5 years of age.[17]

Virology

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HCoV-229E is one of seven known coronaviruses to infect humans. The other six are:[18]

Research

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Chloroquine, a zinc ionophore, inhibits the replication of Human coronavirus 229E in cell culture.[19]

Human HCoV-229E, and human HCoV-NL63, likely originated from bats.[20]

History

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A researcher at the University of Chicago, Dorothy Hamre, first identified 229E in 1965.[21][22]

In 2021 the International Committee on Taxonomy of Viruses (ICTV) approved a new system of naming viruses, by using binomial names. [23]

In 2023 HCoV-229E was renamed to Alphacoronavirus chicagoense

See also

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References

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  1. ^ "Taxon Details | ICTV". International Committee on Taxonomy of Viruses (ICTV). Retrieved 25 July 2024.
  2. ^ Lim, Yvonne Xinyi; Ng, Yan Ling; Tam, James P.; Liu, Ding Xiang (2016-07-25). "Human Coronaviruses: A Review of Virus–Host Interactions". Diseases. 4 (3): 26. doi:10.3390/diseases4030026. ISSN 2079-9721. PMC 5456285. PMID 28933406. See Table 1.
  3. ^ Fehr AR, Perlman S (2015). "Coronaviruses: An Overview of Their Replication and Pathogenesis". In Maier HJ, Bickerton E, Britton P (eds.). Coronaviruses. Methods in Molecular Biology. Vol. 1282. Springer. pp. 1–23. doi:10.1007/978-1-4939-2438-7_1. ISBN 978-1-4939-2438-7. PMC 4369385. PMID 25720466. See Table 1.
  4. ^ Lau, S. K.; Lee, P.; Tsang, A. K.; Yip, C. C.; Tse, H.; Lee, R. A.; So, L. Y.; Lau, Y. L.; Chan, K. H.; Woo, P. C.; Yuen, K. Y. (2011). "Molecular epidemiology of human coronavirus OC43 reveals evolution of different genotypes over time and recent emergence of a novel genotype due to natural recombination". Journal of Virology. 85 (21): 11325–11337. doi:10.1128/JVI.05512-11. PMC 3194943. PMID 21849456.
  5. ^ Gaunt, E. R.; Hardie, A.; Claas, E. C.; Simmonds, P.; Templeton, K. E. (2010). "Epidemiology and clinical presentations of the four human coronaviruses 229E, HKU1, NL63, and OC43 detected over 3 years using a novel multiplex real-time PCR method". Journal of Clinical Microbiology. 48 (8): 2940–2947. doi:10.1128/JCM.00636-10. PMC 2916580. PMID 20554810.
  6. ^ "Virus Taxonomy: 2018 Release". International Committee on Taxonomy of Viruses (ICTV). October 2018. Retrieved 13 January 2019.
  7. ^ Woo, Patrick C. Y.; Huang, Yi; Lau, Susanna K. P.; Yuen, Kwok-Yung (2010-08-24). "Coronavirus Genomics and Bioinformatics Analysis". Viruses. 2 (8): 1804–1820. doi:10.3390/v2081803. ISSN 1999-4915. PMC 3185738. PMID 21994708. Figure 2. Phylogenetic analysis of RNA-dependent RNA polymerases (Pol) of coronaviruses with complete genome sequences available. The tree was constructed by the neighbor-joining method and rooted using Breda virus polyprotein.
  8. ^ Vassilara, F.; Spyridaki, A.; Pothitos, G.; Deliveliotou, A.; Papadopoulos, A. (2018). "A Rare Case of Human Coronavirus 229E Associated with Acute Respiratory Distress Syndrome in a Healthy Adult". Case Reports in Infectious Diseases. 2018: 1–4. doi:10.1155/2018/6796839. PMC 5925015. PMID 29850307.
  9. ^ Pene, F.; Merlat, A.; Vabret, A.; Rozenberg, F.; Buzyn, A.; Dreyfus, F.; Cariou, A.; Freymuth, F.; Lebon, P. (2003). "Coronavirus 229E-related pneumonia in immunocompromised patients". Clinical Infectious Diseases. 37 (7): 929–932. doi:10.1086/377612. PMC 7107892. PMID 13130404.
  10. ^ Vabret, A.; Mourez, T.; Gouarin, S.; Petitjean, J.; Freymuth, F. (2003). "An outbreak of coronavirus OC43 respiratory infection in Normandy, France". Clinical Infectious Diseases. 36 (8): 985–989. doi:10.1086/374222. PMC 7109673. PMID 12684910.
  11. ^ Woo, P. C.; Lau, S. K.; Tsoi, H. W.; Huang, Y.; Poon, R. W.; Chu, C. M.; Lee, R. A.; Luk, W. K.; Wong, G. K.; Wong, B. H.; Cheng, V. C.; Tang, B. S.; Wu, A. K.; Yung, R. W.; Chen, H.; Guan, Y.; Chan, K. H.; Yuen, K. Y. (2005). "Clinical and molecular epidemiological features of coronavirus HKU1-associated community-acquired pneumonia". The Journal of Infectious Diseases. 192 (11): 1898–2707. doi:10.1086/497151. PMC 7110183. PMID 16267760.
  12. ^ Fields, B. N., D. M. Knipe, and P. M. Howley (ed.). 1996. Fields virology, 3rd ed. Lippincott-Raven, Philadelphia, PA.
  13. ^ Van Der Hoek, L.; Pyrc, K.; Berkhout, B. (2006). "Human coronavirus NL63, a new respiratory virus". FEMS Microbiology Reviews. 30 (5): 760–773. doi:10.1111/j.1574-6976.2006.00032.x. PMC 7109777. PMID 16911043.
  14. ^ Esper, F.; Weibel, C.; Ferguson, D.; Landry, M. L.; Kahn, J. S. (2006). "Coronavirus HKU1 infection in the United States". Emerging Infectious Diseases. 12 (5): 775–779. doi:10.3201/eid1205.051316. PMC 3374449. PMID 16704837.
  15. ^ Gerna, G.; Percivalle, E.; Sarasini, A.; Campanini, G.; Piralla, A.; Rovida, F.; Genini, E.; Marchi, A.; Baldanti, F. (2007). "Human respiratory coronavirus HKU1 versus other coronavirus infections in Italian hospitalised patients". Journal of Clinical Virology. 38 (3): 244–250. doi:10.1016/j.jcv.2006.12.008. PMC 7108341. PMID 17222582.
  16. ^ Kaye, H. S.; Marsh, H. B.; Dowdle, W. R. (1971). "Seroepidemiologic survey of coronavirus (Strain OC 43) related infections in a children's population". American Journal of Epidemiology. 94 (1): 43–49. doi:10.1093/oxfordjournals.aje.a121293. PMC 7109649. PMID 5556222.
  17. ^ Principi, N.; Bosis, S.; Esposito, S. (2010). "Effects of coronavirus infections in children". Emerging Infectious Diseases. 16 (2): 183–188. doi:10.3201/eid1602.090469. PMC 2957994. PMID 20113545.
  18. ^ Leung, Daniel (20 January 2019). "Coronaviruses (including SARS)". Infectious Disease Advisor. Decision Support in Medicine, LLC. Retrieved 1 August 2020.
  19. ^ de Wilde, Adriaan H.; Jochmans, Dirk; Posthuma, Clara C.; Zevenhoven-Dobbe, Jessika C.; van Nieuwkoop, Stefan; Bestebroer, Theo M.; van den Hoogen, Bernadette G.; Neyts, Johan; Snijder, Eric J. (August 2014). "Screening of an FDA-Approved Compound Library Identifies Four Small-Molecule Inhibitors of Middle East Respiratory Syndrome Coronavirus Replication in Cell Culture". Antimicrobial Agents and Chemotherapy. 58 (8): 4875–4884. doi:10.1128/AAC.03011-14. PMC 4136071. PMID 24841269.
  20. ^ Tao, Y.; Shi, M.; Chommanard, C.; Queen, K.; Zhang, J.; Markotter, W.; Kuzmin, I. V.; Holmes, E. C.; Tong, S. (2017). "Surveillance of Bat Coronaviruses in Kenya Identifies Relatives of Human Coronaviruses NL63 and 229E and Their Recombination History". Journal of Virology. 91 (5). doi:10.1128/JVI.01953-16. PMC 5309958. PMID 28077633.
  21. ^ Knapp, Alex. "The Secret History Of The First Coronavirus". Forbes. Retrieved 2020-05-06.
  22. ^ Hamre, D.; Procknow, J. J. (1966-01-01). "A New Virus Isolated from the Human Respiratory Tract". Experimental Biology and Medicine. 121 (1): 190–193. doi:10.3181/00379727-121-30734. ISSN 1535-3702. PMID 4285768. S2CID 1314901.
  23. ^ "Binomial nomenclature for virus species (continued)". EPPO Global Database. Retrieved 25 July 2024.
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